[SciPy-User] ANN: scipy 0.18.0 release

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[SciPy-User] ANN: scipy 0.18.0 release

Evgeni Burovski
On behalf of the Scipy development team I am pleased to announce the
availability of Scipy 0.18.0. This release contains several great new
features and a large number of bug fixes and various improvements, as
detailed in the release notes below.
99 people contributed to this release over the course of six months.

Thanks to everyone who contributed!

This release requires Python 2.7 or 3.4-3.5 and NumPy 1.7.2 or
greater. Source tarballs and release notes can be found at
https://github.com/scipy/scipy/releases/tag/v0.18.0.

OS X and Linux wheels are available from PyPI. For security-conscious,
the wheels themselves are signed with my GPG key. Additionally, you
can checksum the wheels and verify the checksums with those listed in
the README file at
https://github.com/scipy/scipy/releases/tag/v0.18.0.


Cheers,

Evgeni



-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

==========================
SciPy 0.18.0 Release Notes
==========================

.. contents::

SciPy 0.18.0 is the culmination of 6 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and
better documentation.  There have been a number of deprecations and
API changes in this release, which are documented below.  All users
are encouraged to upgrade to this release, as there are a large number
of bug-fixes and optimizations.  Moreover, our development attention
will now shift to bug-fix releases on the 0.19.x branch, and on adding
new features on the master branch.

This release requires Python 2.7 or 3.4-3.5 and NumPy 1.7.1 or greater.

Highlights of this release include:

- - A new ODE solver for two-point boundary value problems,
  `scipy.optimize.solve_bvp`.
- - A new class, `CubicSpline`, for cubic spline interpolation of data.
- - N-dimensional tensor product polynomials, `scipy.interpolate.NdPPoly`.
- - Spherical Voronoi diagrams, `scipy.spatial.SphericalVoronoi`.
- - Support for discrete-time linear systems, `scipy.signal.dlti`.


New features
============

`scipy.integrate` improvements
- ------------------------------

A solver of two-point boundary value problems for ODE systems has been
implemented in `scipy.integrate.solve_bvp`. The solver allows for non-separated
boundary conditions, unknown parameters and certain singular terms. It finds
a C1 continious solution using a fourth-order collocation algorithm.


`scipy.interpolate` improvements
- --------------------------------

Cubic spline interpolation is now available via `scipy.interpolate.CubicSpline`.
This class represents a piecewise cubic polynomial passing through given points
and C2 continuous. It is represented in the standard polynomial basis on each
segment.

A representation of n-dimensional tensor product piecewise polynomials is
available as the `scipy.interpolate.NdPPoly` class.

Univariate piecewise polynomial classes, `PPoly` and `Bpoly`, can now be
evaluated on periodic domains. Use ``extrapolate="periodic"`` keyword
argument for this.


`scipy.fftpack` improvements
- ----------------------------

`scipy.fftpack.next_fast_len` function computes the next "regular" number for
FFTPACK. Padding the input to this length can give significant performance
increase for `scipy.fftpack.fft`.


`scipy.signal` improvements
- ---------------------------

Resampling using polyphase filtering has been implemented in the function
`scipy.signal.resample_poly`. This method upsamples a signal, applies a
zero-phase low-pass FIR filter, and downsamples using `scipy.signal.upfirdn`
(which is also new in 0.18.0).  This method can be faster than FFT-based
filtering provided by `scipy.signal.resample` for some signals.

`scipy.signal.firls`, which constructs FIR filters using least-squares error
minimization, was added.

`scipy.signal.sosfiltfilt`, which does forward-backward filtering like
`scipy.signal.filtfilt` but for second-order sections, was added.


Discrete-time linear systems
~~~~~~~~~~~~~~~~~~~~~~~~~~~~

`scipy.signal.dlti` provides an implementation of discrete-time linear systems.
Accordingly, the `StateSpace`, `TransferFunction` and `ZerosPolesGain` classes
have learned a the new keyword, `dt`, which can be used to create discrete-time
instances of the corresponding system representation.


`scipy.sparse` improvements
- ---------------------------

The functions `sum`, `max`, `mean`, `min`, `transpose`, and `reshape` in
`scipy.sparse` have had their signatures augmented with additional arguments
and functionality so as to improve compatibility with analogously defined
functions in `numpy`.

Sparse matrices now have a `count_nonzero` method, which counts the number of
nonzero elements in the matrix. Unlike `getnnz()` and ``nnz`` propety,
which return the number of stored entries (the length of the data attribute),
this method counts the actual number of non-zero entries in data.


`scipy.optimize` improvements
- -----------------------------

The implementation of Nelder-Mead minimization,
`scipy.minimize(..., method="Nelder-Mead")`, obtained a new keyword,
`initial_simplex`, which can be used to specify the initial simplex for the
optimization process.

Initial step size selection in CG and BFGS minimizers has been improved. We
expect that this change will improve numeric stability of optimization in some
cases. See pull request gh-5536 for details.

Handling of infinite bounds in SLSQP optimization has been improved. We expect
that this change will improve numeric stability of optimization in the some
cases. See pull request gh-6024 for details.

A large suite of global optimization benchmarks has been added to
``scipy/benchmarks/go_benchmark_functions``. See pull request gh-4191
for details.

Nelder-Mead and Powell minimization will now only set defaults for
maximum iterations or function evaluations if neither limit is set by
the caller. In some cases with a slow converging function and only 1
limit set, the minimization may continue for longer than with previous
versions and so is more likely to reach convergence. See issue gh-5966.

`scipy.stats` improvements
- --------------------------

Trapezoidal distribution has been implemented as `scipy.stats.trapz`.
Skew normal distribution has been implemented as `scipy.stats.skewnorm`.
Burr type XII distribution has been implemented as `scipy.stats.burr12`.
Three- and four-parameter kappa distributions have been implemented as
`scipy.stats.kappa3` and `scipy.stats.kappa4`, respectively.

New `scipy.stats.iqr` function computes the interquartile region of a
distribution.

Random matrices
~~~~~~~~~~~~~~~

`scipy.stats.special_ortho_group` and `scipy.stats.ortho_group` provide
generators of random matrices in the SO(N) and O(N) groups, respectively. They
generate matrices in the Haar distribution, the only uniform distribution on
these group manifolds.

`scipy.stats.random_correlation` provides a generator for random
correlation matrices, given specified eigenvalues.


`scipy.linalg` improvements
- ---------------------------

`scipy.linalg.svd` gained a new keyword argument, ``lapack_driver``. Available
drivers are ``gesdd`` (default) and ``gesvd``.

`scipy.linalg.lapack.ilaver` returns the version of the LAPACK library SciPy
links to.


`scipy.spatial` improvements
- ----------------------------

Boolean distances, `scipy.spatial.pdist`, have been sped up. Improvements vary
by the function and the input size. In many cases, one can expect a speed-up
of x2--x10.

New class `scipy.spatial.SphericalVoronoi` constructs Voronoi diagrams on the
surface of a sphere. See pull request gh-5232 for details.

`scipy.cluster` improvements
- ----------------------------

A new clustering algorithm, the nearest neighbor chain algorithm, has been
implemented for `scipy.cluster.hierarchy.linkage`. As a result, one can expect
a significant algorithmic improvement (:math:`O(N^2)` instead of :math:`O(N^3)`)
for several linkage methods.


`scipy.special` improvements
- ----------------------------

The new function `scipy.special.loggamma` computes the principal branch of the
logarithm of the Gamma function. For real input, ``loggamma`` is compatible
with `scipy.special.gammaln`. For complex input, it has more consistent
behavior in the complex plane and should be preferred over ``gammaln``.

Vectorized forms of spherical Bessel functions have been implemented as
`scipy.special.spherical_jn`, `scipy.special.spherical_kn`,
`scipy.special.spherical_in` and `scipy.special.spherical_yn`.
They are recommended for use over ``sph_*`` functions, which are now deprecated.

Several special functions have been extended to the complex domain and/or
have seen domain/stability improvements. This includes `spence`, `digamma`,
`log1p` and several others.


Deprecated features
===================

The cross-class properties of `lti` systems have been deprecated. The
following properties/setters will raise a `DeprecationWarning`:

Name - (accessing/setting raises warning) - (setting raises warning)
* StateSpace - (`num`, `den`, `gain`) - (`zeros`, `poles`)
* TransferFunction (`A`, `B`, `C`, `D`, `gain`) - (`zeros`, `poles`)
* ZerosPolesGain (`A`, `B`, `C`, `D`, `num`, `den`) - ()

Spherical Bessel functions, ``sph_in``, ``sph_jn``, ``sph_kn``, ``sph_yn``,
``sph_jnyn`` and ``sph_inkn`` have been deprecated in favor of
`scipy.special.spherical_jn` and ``spherical_kn``, ``spherical_yn``,
``spherical_in``.

The following functions in `scipy.constants` are deprecated: ``C2K``, ``K2C``,
``C2F``, ``F2C``, ``F2K`` and ``K2F``.  They are superceded by a new function
`scipy.constants.convert_temperature` that can perform all those conversions
plus to/from the Rankine temperature scale.


Backwards incompatible changes
==============================

`scipy.optimize`
- ----------------

The convergence criterion for ``optimize.bisect``,
``optimize.brentq``, ``optimize.brenth``, and ``optimize.ridder`` now
works the same as ``numpy.allclose``.

`scipy.ndimage`
- ---------------

The offset in ``ndimage.iterpolation.affine_transform``
is now consistently added after the matrix is applied,
independent of if the matrix is specified using a one-dimensional
or a two-dimensional array.

`scipy.stats`
- -------------

``stats.ks_2samp`` used to return nonsensical values if the input was
not real or contained nans.  It now raises an exception for such inputs.

Several deprecated methods of `scipy.stats` distributions have been removed:
``est_loc_scale``, ``vecfunc``, ``veccdf`` and ``vec_generic_moment``.

Deprecated functions ``nanmean``, ``nanstd`` and ``nanmedian`` have been removed
from `scipy.stats`. These functions were deprecated in scipy 0.15.0 in favor
of their `numpy` equivalents.

A bug in the ``rvs()`` method of the distributions in `scipy.stats` has
been fixed.  When arguments to ``rvs()`` were given that were shaped for
broadcasting, in many cases the returned random samples were not random.
A simple example of the problem is ``stats.norm.rvs(loc=np.zeros(10))``.
Because of the bug, that call would return 10 identical values.  The bug
only affected code that relied on the broadcasting of the shape, location
and scale parameters.

The ``rvs()`` method also accepted some arguments that it should not have.
There is a potential for backwards incompatibility in cases where ``rvs()``
accepted arguments that are not, in fact, compatible with broadcasting.
An example is

    stats.gamma.rvs([2, 5, 10, 15], size=(2,2))

The shape of the first argument is not compatible with the requested size,
but the function still returned an array with shape (2, 2).  In scipy 0.18,
that call generates a ``ValueError``.

`scipy.io`
- ----------

`scipy.io.netcdf` masking now gives precedence to the ``_FillValue`` attribute
over the ``missing_value`` attribute, if both are given. Also, data are only
treated as missing if they match one of these attributes exactly: values that
differ by roundoff from ``_FillValue`` or ``missing_value`` are no longer
treated as missing values.

`scipy.interpolate`
- -------------------

`scipy.interpolate.PiecewisePolynomial` class has been removed. It has been
deprecated in scipy 0.14.0, and
`scipy.interpolate.BPoly.from_derivatives` serves
as a drop-in replacement.


Other changes
=============

Scipy now uses ``setuptools`` for its builds instead of plain distutils.  This
fixes usage of ``install_requires='scipy'`` in the ``setup.py`` files of
projects that depend on Scipy (see Numpy issue gh-6551 for details).  It
potentially affects the way that build/install methods for Scipy itself behave
though.  Please report any unexpected behavior on the Scipy issue tracker.

PR `#6240 <https://github.com/scipy/scipy/pull/6240>`__
changes the interpretation of the `maxfun` option in `L-BFGS-B` based routines
in the `scipy.optimize` module.
An `L-BFGS-B` search consists of multiple iterations,
with each iteration consisting of one or more function evaluations.
Whereas the old search strategy terminated immediately upon reaching `maxfun`
function evaluations, the new strategy allows the current iteration
to finish despite reaching `maxfun`.

The bundled copy of Qhull in the `scipy.spatial` subpackage has been upgraded to
version 2015.2.

The bundled copy of ARPACK in the `scipy.sparse.linalg` subpackage has been
upgraded to arpack-ng 3.3.0.

The bundled copy of SuperLU in the `scipy.sparse` subpackage has been upgraded
to version 5.1.1.


Authors
=======

* @endolith
* @yanxun827 +
* @kleskjr +
* @MYheavyGo +
* @solarjoe +
* Gregory Allen +
* Gilles Aouizerate +
* Tom Augspurger +
* Henrik Bengtsson +
* Felix Berkenkamp
* Per Brodtkorb
* Lars Buitinck
* Daniel Bunting +
* Evgeni Burovski
* CJ Carey
* Tim Cera
* Grey Christoforo +
* Robert Cimrman
* Philip DeBoer +
* Yves Delley +
* Dávid Bodnár +
* Ion Elberdin +
* Gabriele Farina +
* Yu Feng
* Andrew Fowlie +
* Joseph Fox-Rabinovitz
* Simon Gibbons +
* Neil Girdhar +
* Kolja Glogowski +
* Christoph Gohlke
* Ralf Gommers
* Todd Goodall +
* Johnnie Gray +
* Alex Griffing
* Olivier Grisel
* Thomas Haslwanter +
* Michael Hirsch +
* Derek Homeier
* Golnaz Irannejad +
* Marek Jacob +
* InSuk Joung +
* Tetsuo Koyama +
* Eugene Krokhalev +
* Eric Larson
* Denis Laxalde
* Antony Lee
* Jerry Li +
* Henry Lin +
* Nelson Liu +
* Loïc Estève
* Lei Ma +
* Osvaldo Martin +
* Stefano Martina +
* Nikolay Mayorov
* Matthieu Melot +
* Sturla Molden
* Eric Moore
* Alistair Muldal +
* Maniteja Nandana
* Tavi Nathanson +
* Andrew Nelson
* Joel Nothman
* Behzad Nouri
* Nikolai Nowaczyk +
* Juan Nunez-Iglesias +
* Ted Pudlik
* Eric Quintero
* Yoav Ram
* Jonas Rauber +
* Tyler Reddy +
* Juha Remes
* Garrett Reynolds +
* Ariel Rokem +
* Fabian Rost +
* Bill Sacks +
* Jona Sassenhagen +
* Kari Schoonbee +
* Marcello Seri +
* Sourav Singh +
* Martin Spacek +
* Søren Fuglede Jørgensen +
* Bhavika Tekwani +
* Martin Thoma +
* Sam Tygier +
* Meet Udeshi +
* Utkarsh Upadhyay
* Bram Vandekerckhove +
* Sebastián Vanrell +
* Ze Vinicius +
* Pauli Virtanen
* Stefan van der Walt
* Warren Weckesser
* Jakub Wilk +
* Josh Wilson
* Phillip J. Wolfram +
* Nathan Woods
* Haochen Wu
* G Young +

A total of 99 people contributed to this release.
People with a "+" by their names contributed a patch for the first time.
This list of names is automatically generated, and may not be fully complete.


Issues closed for 0.18.0
- ------------------------

- - `#1484 <https://github.com/scipy/scipy/issues/1484>`__: SVD using
*GESVD lapack drivers (Trac #957)
- - `#1547 <https://github.com/scipy/scipy/issues/1547>`__:
Inconsistent use of offset in
ndimage.interpolation.affine_transform()...
- - `#1609 <https://github.com/scipy/scipy/issues/1609>`__:
special.hyp0f1 returns nan (Trac #1082)
- - `#1656 <https://github.com/scipy/scipy/issues/1656>`__: fmin_slsqp
enhancement (Trac #1129)
- - `#2069 <https://github.com/scipy/scipy/issues/2069>`__: stats
broadcasting in rvs (Trac #1544)
- - `#2165 <https://github.com/scipy/scipy/issues/2165>`__: sph_jn
returns false results for some orders/values (Trac #1640)
- - `#2255 <https://github.com/scipy/scipy/issues/2255>`__: Incorrect
order of translation and rotation in affine_transform...
- - `#2332 <https://github.com/scipy/scipy/issues/2332>`__: hyp0f1
args and return values are unnumpyic (Trac #1813)
- - `#2534 <https://github.com/scipy/scipy/issues/2534>`__: The sparse
.sum() method with uint8 dtype does not act like the...
- - `#3113 <https://github.com/scipy/scipy/issues/3113>`__: Implement
ufuncs for CSPHJY, SPHJ, SPHY, CSPHIK, SPHI, SPHIK...
- - `#3568 <https://github.com/scipy/scipy/issues/3568>`__: SciPy
0.13.3 - CentOS5 - Errors in test_arpack
- - `#3581 <https://github.com/scipy/scipy/issues/3581>`__: optimize:
stepsize in fmin_bfgs is "bad"
- - `#4476 <https://github.com/scipy/scipy/issues/4476>`__:
scipy.sparse non-native endian bug
- - `#4484 <https://github.com/scipy/scipy/issues/4484>`__: ftol in
optimize.fmin fails to work
- - `#4510 <https://github.com/scipy/scipy/issues/4510>`__:
sparsetools.cxx call_thunk can segfault due to out of bounds...
- - `#5051 <https://github.com/scipy/scipy/issues/5051>`__: ftol and
xtol for _minimize_neldermead are absolute instead of...
- - `#5097 <https://github.com/scipy/scipy/issues/5097>`__: proposal:
spherical Voronoi diagrams
- - `#5123 <https://github.com/scipy/scipy/issues/5123>`__: Call to
`scipy.sparse.coo_matrix` fails when passed Cython typed...
- - `#5220 <https://github.com/scipy/scipy/issues/5220>`__:
scipy.cluster.hierarchy.{ward,median,centroid} does not work...
- - `#5379 <https://github.com/scipy/scipy/issues/5379>`__: Add a
build step at the end of .travis.yml that uploads working...
- - `#5440 <https://github.com/scipy/scipy/issues/5440>`__:
scipy.optimize.basinhopping: accept_test returning numpy.bool_...
- - `#5452 <https://github.com/scipy/scipy/issues/5452>`__: Error in
scipy.integrate.nquad when using variable integration...
- - `#5520 <https://github.com/scipy/scipy/issues/5520>`__: Cannot
inherit csr_matrix properly
- - `#5533 <https://github.com/scipy/scipy/issues/5533>`__: Kendall
tau implementation uses Python mergesort
- - `#5553 <https://github.com/scipy/scipy/issues/5553>`__:
stats.tiecorrect overflows
- - `#5589 <https://github.com/scipy/scipy/issues/5589>`__: Add the
Type XII Burr distribution to stats.
- - `#5612 <https://github.com/scipy/scipy/issues/5612>`__:
sparse.linalg factorizations slow for small k due to default...
- - `#5626 <https://github.com/scipy/scipy/issues/5626>`__: io.netcdf
masking should use masked_equal rather than masked_value
- - `#5637 <https://github.com/scipy/scipy/issues/5637>`__: Simple
cubic spline interpolation?
- - `#5683 <https://github.com/scipy/scipy/issues/5683>`__: BUG:
Akima1DInterpolator may return nans given multidimensional...
- - `#5686 <https://github.com/scipy/scipy/issues/5686>`__:
scipy.stats.ttest_ind_from_stats does not accept arrays
- - `#5702 <https://github.com/scipy/scipy/issues/5702>`__:
scipy.ndimage.interpolation.affine_transform lacks documentation...
- - `#5718 <https://github.com/scipy/scipy/issues/5718>`__: Wrong
computation of weighted minkowski distance in cdist
- - `#5745 <https://github.com/scipy/scipy/issues/5745>`__: move to
setuptools for next release
- - `#5752 <https://github.com/scipy/scipy/issues/5752>`__: DOC:
solve_discrete_lyapunov equation puts transpose in wrong...
- - `#5760 <https://github.com/scipy/scipy/issues/5760>`__:
signal.ss2tf doesn't handle zero-order state-space models
- - `#5764 <https://github.com/scipy/scipy/issues/5764>`__:
Hypergeometric function hyp0f1 behaves incorrectly for complex...
- - `#5814 <https://github.com/scipy/scipy/issues/5814>`__: stats NaN
Policy Error message inconsistent with code
- - `#5833 <https://github.com/scipy/scipy/issues/5833>`__: docstring
of stats.binom_test() needs an update
- - `#5853 <https://github.com/scipy/scipy/issues/5853>`__: Error in
scipy.linalg.expm for complex matrix with shape (1,1)
- - `#5856 <https://github.com/scipy/scipy/issues/5856>`__: Specify
Nelder-Mead initial simplex
- - `#5865 <https://github.com/scipy/scipy/issues/5865>`__:
scipy.linalg.expm fails for certain numpy matrices
- - `#5915 <https://github.com/scipy/scipy/issues/5915>`__:
optimize.basinhopping - variable referenced before assignment.
- - `#5916 <https://github.com/scipy/scipy/issues/5916>`__:
LSQUnivariateSpline fitting failed with knots generated from...
- - `#5927 <https://github.com/scipy/scipy/issues/5927>`__: unicode
vs. string comparison in scipy.stats.binned_statistic_dd
- - `#5936 <https://github.com/scipy/scipy/issues/5936>`__: faster
implementation of ks_2samp
- - `#5948 <https://github.com/scipy/scipy/issues/5948>`__: csc matrix
.mean returns single element matrix rather than scalar
- - `#5959 <https://github.com/scipy/scipy/issues/5959>`__: BUG:
optimize test error for root when using lgmres
- - `#5972 <https://github.com/scipy/scipy/issues/5972>`__: Test
failures for sparse sum tests on 32-bit Python
- - `#5976 <https://github.com/scipy/scipy/issues/5976>`__: Unexpected
exception in scipy.sparse.bmat while using 0 x 0 matrix
- - `#6008 <https://github.com/scipy/scipy/issues/6008>`__:
scipy.special.kl_div not available in 0.14.1
- - `#6011 <https://github.com/scipy/scipy/issues/6011>`__: The
von-Mises entropy is broken
- - `#6016 <https://github.com/scipy/scipy/issues/6016>`__: python
crashes for linalg.interpolative.svd with certain large...
- - `#6017 <https://github.com/scipy/scipy/issues/6017>`__: Wilcoxon
signed-rank test with zero_method="pratt" or "zsplit"...
- - `#6028 <https://github.com/scipy/scipy/issues/6028>`__:
stats.distributions does not have trapezoidal distribution
- - `#6035 <https://github.com/scipy/scipy/issues/6035>`__: Wrong link
in f_oneway
- - `#6056 <https://github.com/scipy/scipy/issues/6056>`__: BUG:
signal.decimate should only accept discrete LTI objects
- - `#6093 <https://github.com/scipy/scipy/issues/6093>`__: Precision
error on Linux 32 bit with openblas
- - `#6101 <https://github.com/scipy/scipy/issues/6101>`__:
Barycentric transforms test error on Python3, 32-bit Linux
- - `#6105 <https://github.com/scipy/scipy/issues/6105>`__:
scipy.misc.face docstring is incorrect
- - `#6113 <https://github.com/scipy/scipy/issues/6113>`__:
scipy.linalg.logm fails for a trivial matrix
- - `#6128 <https://github.com/scipy/scipy/issues/6128>`__: Error in
dot method of sparse COO array, when used with numpy...
- - `#6132 <https://github.com/scipy/scipy/issues/6132>`__: Failures
with latest MKL
- - `#6136 <https://github.com/scipy/scipy/issues/6136>`__: Failures
on `master` with MKL
- - `#6162 <https://github.com/scipy/scipy/issues/6162>`__:
fmin_l_bfgs_b returns inconsistent results (fmin ≠ f(xmin)) and...
- - `#6165 <https://github.com/scipy/scipy/issues/6165>`__:
optimize.minimize infinite loop with Newton-CG
- - `#6167 <https://github.com/scipy/scipy/issues/6167>`__: incorrect
distribution fitting for data containing boundary values.
- - `#6194 <https://github.com/scipy/scipy/issues/6194>`__: lstsq()
and others detect numpy.complex256 as real
- - `#6216 <https://github.com/scipy/scipy/issues/6216>`__: ENH:
improve accuracy of ppf cdf roundtrip for bradford
- - `#6217 <https://github.com/scipy/scipy/issues/6217>`__: BUG:
weibull_min.logpdf return nan for c=1 and x=0
- - `#6218 <https://github.com/scipy/scipy/issues/6218>`__: Is there a
method to cap shortest path search distances?
- - `#6222 <https://github.com/scipy/scipy/issues/6222>`__:
PchipInterpolator no longer handles a 2-element array
- - `#6226 <https://github.com/scipy/scipy/issues/6226>`__: ENH:
improve accuracy for logistic.ppf and logistic.isf
- - `#6227 <https://github.com/scipy/scipy/issues/6227>`__: ENH:
improve accuracy for rayleigh.logpdf and rayleigh.logsf...
- - `#6228 <https://github.com/scipy/scipy/issues/6228>`__: ENH:
improve accuracy of ppf cdf roundtrip for gumbel_l
- - `#6235 <https://github.com/scipy/scipy/issues/6235>`__: BUG:
alpha.pdf and alpha.logpdf returns nan for x=0
- - `#6245 <https://github.com/scipy/scipy/issues/6245>`__: ENH:
improve accuracy for ppf-cdf and sf-isf roundtrips for invgamma
- - `#6263 <https://github.com/scipy/scipy/issues/6263>`__: BUG:
stats: Inconsistency in the multivariate_normal docstring
- - `#6292 <https://github.com/scipy/scipy/issues/6292>`__: Python 3
unorderable type errors in test_sparsetools.TestInt32Overflow
- - `#6316 <https://github.com/scipy/scipy/issues/6316>`__:
TestCloughTocher2DInterpolator.test_dense crashes
python3.5.2rc1_64bit...
- - `#6318 <https://github.com/scipy/scipy/issues/6318>`__: Scipy
interp1d 'nearest' not working for high values on x-axis


Pull requests for 0.18.0
- ------------------------

- - `#3226 <https://github.com/scipy/scipy/pull/3226>`__: DOC: Change
`nb` and `na` to conventional m and n
- - `#3867 <https://github.com/scipy/scipy/pull/3867>`__: allow
cKDTree.query taking a list input in k.
- - `#4191 <https://github.com/scipy/scipy/pull/4191>`__: ENH:
Benchmarking global optimizers
- - `#4356 <https://github.com/scipy/scipy/pull/4356>`__: ENH: add
PPoly.solve(y) for solving ``p(x) == y``
- - `#4370 <https://github.com/scipy/scipy/pull/4370>`__: DOC separate
boolean distance functions for clarity
- - `#4678 <https://github.com/scipy/scipy/pull/4678>`__: BUG: sparse:
ensure index dtype is large enough to pass all parameters...
- - `#4881 <https://github.com/scipy/scipy/pull/4881>`__:
scipy.signal: Add the class dlti for linear discrete-time systems....
- - `#4901 <https://github.com/scipy/scipy/pull/4901>`__: MAINT: add
benchmark and improve docstring for signal.lfilter
- - `#5043 <https://github.com/scipy/scipy/pull/5043>`__: ENH: sparse:
add count_nonzero method
- - `#5136 <https://github.com/scipy/scipy/pull/5136>`__: Attribute
kurtosistest() to Anscombe & Glynn (1983)
- - `#5186 <https://github.com/scipy/scipy/pull/5186>`__: ENH: Port upfirdn
- - `#5232 <https://github.com/scipy/scipy/pull/5232>`__: ENH: adding
spherical Voronoi diagram algorithm to scipy.spatial
- - `#5279 <https://github.com/scipy/scipy/pull/5279>`__: ENH: Bessel
filters with different normalizations, high order
- - `#5384 <https://github.com/scipy/scipy/pull/5384>`__: BUG: Closes
#5027 distance function always casts bool to double
- - `#5392 <https://github.com/scipy/scipy/pull/5392>`__: ENH: Add
zero_phase kwarg to signal.decimate
- - `#5394 <https://github.com/scipy/scipy/pull/5394>`__: MAINT:
sparse: non-canonical test cleanup and fixes
- - `#5424 <https://github.com/scipy/scipy/pull/5424>`__: DOC: add
Scipy developers guide
- - `#5442 <https://github.com/scipy/scipy/pull/5442>`__: STY: PEP8 amendments
- - `#5472 <https://github.com/scipy/scipy/pull/5472>`__: Online QR in LGMRES
- - `#5526 <https://github.com/scipy/scipy/pull/5526>`__: BUG: stats:
Fix broadcasting in the rvs() method of the distributions.
- - `#5530 <https://github.com/scipy/scipy/pull/5530>`__: MAINT:
sparse: set `format` attr explicitly
- - `#5536 <https://github.com/scipy/scipy/pull/5536>`__: optimize:
fix up cg/bfgs initial step sizes
- - `#5548 <https://github.com/scipy/scipy/pull/5548>`__: PERF:
improves performance in stats.kendalltau
- - `#5549 <https://github.com/scipy/scipy/pull/5549>`__: ENH:
Nearest-neighbor chain algorithm for hierarchical clustering
- - `#5554 <https://github.com/scipy/scipy/pull/5554>`__: MAINT/BUG:
closes overflow bug in stats.tiecorrect
- - `#5557 <https://github.com/scipy/scipy/pull/5557>`__: BUG: modify
optimize.bisect to achieve desired tolerance
- - `#5581 <https://github.com/scipy/scipy/pull/5581>`__: DOC:
Tutorial for least_squares
- - `#5606 <https://github.com/scipy/scipy/pull/5606>`__: ENH:
differential_evolution - moving core loop of solve method...
- - `#5609 <https://github.com/scipy/scipy/pull/5609>`__: [MRG] test
against numpy dev
- - `#5611 <https://github.com/scipy/scipy/pull/5611>`__: use
setuptools for bdist_egg distributions
- - `#5615 <https://github.com/scipy/scipy/pull/5615>`__: MAINT:
linalg: tighten _decomp_update + special: remove unused...
- - `#5622 <https://github.com/scipy/scipy/pull/5622>`__: Add SO(N)
rotation matrix generator
- - `#5623 <https://github.com/scipy/scipy/pull/5623>`__: ENH:
special: Add vectorized spherical Bessel functions.
- - `#5627 <https://github.com/scipy/scipy/pull/5627>`__: Response to
issue #5160, implements the skew normal distribution...
- - `#5628 <https://github.com/scipy/scipy/pull/5628>`__: DOC: Align
the description and operation
- - `#5632 <https://github.com/scipy/scipy/pull/5632>`__: DOC:
special: Expanded docs for Airy, elliptic, Bessel functions.
- - `#5633 <https://github.com/scipy/scipy/pull/5633>`__: MAINT:
linalg: unchecked malloc in _decomp_update
- - `#5634 <https://github.com/scipy/scipy/pull/5634>`__: MAINT:
optimize: tighten _group_columns
- - `#5640 <https://github.com/scipy/scipy/pull/5640>`__: Fixes for
io.netcdf masking
- - `#5645 <https://github.com/scipy/scipy/pull/5645>`__: MAINT: size
0 vector handling in cKDTree range queries
- - `#5649 <https://github.com/scipy/scipy/pull/5649>`__: MAINT:
update license text
- - `#5650 <https://github.com/scipy/scipy/pull/5650>`__: DOC: Clarify
Exponent Order in ltisys.py
- - `#5651 <https://github.com/scipy/scipy/pull/5651>`__: DOC: Clarify
Documentation for scipy.special.gammaln
- - `#5652 <https://github.com/scipy/scipy/pull/5652>`__: DOC: Fixed
scipy.special.betaln Doc
- - `#5653 <https://github.com/scipy/scipy/pull/5653>`__: [MRG] ENH:
CubicSpline interpolator
- - `#5654 <https://github.com/scipy/scipy/pull/5654>`__: ENH: Burr12
distribution to stats module
- - `#5659 <https://github.com/scipy/scipy/pull/5659>`__: DOC: Define
BEFORE/AFTER in runtests.py -h for bench-compare
- - `#5660 <https://github.com/scipy/scipy/pull/5660>`__: MAINT:
remove functions deprecated before 0.16.0
- - `#5662 <https://github.com/scipy/scipy/pull/5662>`__: ENH:
Circular statistic optimization
- - `#5663 <https://github.com/scipy/scipy/pull/5663>`__: MAINT:
remove uses of np.testing.rand
- - `#5665 <https://github.com/scipy/scipy/pull/5665>`__: MAINT:
spatial: remove matching distance implementation
- - `#5667 <https://github.com/scipy/scipy/pull/5667>`__: Change some
HTTP links to HTTPS
- - `#5669 <https://github.com/scipy/scipy/pull/5669>`__: DOC: zpk2sos
can't do analog, array_like, etc.
- - `#5670 <https://github.com/scipy/scipy/pull/5670>`__: Update conf.py
- - `#5672 <https://github.com/scipy/scipy/pull/5672>`__: MAINT: move
a sample distribution to a subclass of rv_discrete
- - `#5678 <https://github.com/scipy/scipy/pull/5678>`__: MAINT:
stats: remove est_loc_scale method
- - `#5679 <https://github.com/scipy/scipy/pull/5679>`__: MAINT: DRY
up generic computations for discrete distributions
- - `#5680 <https://github.com/scipy/scipy/pull/5680>`__: MAINT: stop
shadowing builtins in stats.distributions
- - `#5681 <https://github.com/scipy/scipy/pull/5681>`__: forward port
ENH: Re-enable broadcasting of fill_value
- - `#5684 <https://github.com/scipy/scipy/pull/5684>`__: BUG: Fix
Akima1DInterpolator returning nans
- - `#5690 <https://github.com/scipy/scipy/pull/5690>`__: BUG: fix
stats.ttest_ind_from_stats to handle arrays.
- - `#5691 <https://github.com/scipy/scipy/pull/5691>`__: BUG: fix
generator in io._loadarff to comply with PEP 0479
- - `#5693 <https://github.com/scipy/scipy/pull/5693>`__: ENH: use
math.factorial for exact factorials
- - `#5695 <https://github.com/scipy/scipy/pull/5695>`__: DOC: dx
might be a float, not only an integer
- - `#5699 <https://github.com/scipy/scipy/pull/5699>`__: MAINT: io:
micro-optimize Matlab reading code for size
- - `#5701 <https://github.com/scipy/scipy/pull/5701>`__: Implement
OptimizeResult.__dir__
- - `#5703 <https://github.com/scipy/scipy/pull/5703>`__: ENH: stats:
make R² printing optional in probplot
- - `#5704 <https://github.com/scipy/scipy/pull/5704>`__: MAINT: typo ouf->out
- - `#5705 <https://github.com/scipy/scipy/pull/5705>`__: BUG: fix
typo in query_pairs
- - `#5707 <https://github.com/scipy/scipy/pull/5707>`__: DOC:Add some
explanation for ftol xtol in scipy.optimize.fmin
- - `#5708 <https://github.com/scipy/scipy/pull/5708>`__: DOC:
optimize: PEP8 minimize docstring
- - `#5709 <https://github.com/scipy/scipy/pull/5709>`__: MAINT:
optimize Cython code for speed and size
- - `#5713 <https://github.com/scipy/scipy/pull/5713>`__: [DOC] Fix
broken link to reference
- - `#5717 <https://github.com/scipy/scipy/pull/5717>`__: DOC:
curve_fit raises RuntimeError on failure.
- - `#5724 <https://github.com/scipy/scipy/pull/5724>`__: forward port gh-5720
- - `#5728 <https://github.com/scipy/scipy/pull/5728>`__: STY: remove
a blank line
- - `#5729 <https://github.com/scipy/scipy/pull/5729>`__: ENH:
spatial: speed up boolean distances
- - `#5732 <https://github.com/scipy/scipy/pull/5732>`__: MAINT:
differential_evolution changes to default keywords break...
- - `#5733 <https://github.com/scipy/scipy/pull/5733>`__: TST:
differential_evolution - population initiation tests
- - `#5736 <https://github.com/scipy/scipy/pull/5736>`__: Complex
number support in log1p, expm1, and xlog1py
- - `#5741 <https://github.com/scipy/scipy/pull/5741>`__: MAINT:
sparse: clean up extraction functions
- - `#5742 <https://github.com/scipy/scipy/pull/5742>`__: DOC: signal:
Explain fftbins in get_window
- - `#5748 <https://github.com/scipy/scipy/pull/5748>`__: ENH: Add
O(N) random matrix generator
- - `#5749 <https://github.com/scipy/scipy/pull/5749>`__: ENH: Add
polyphase resampling
- - `#5756 <https://github.com/scipy/scipy/pull/5756>`__: RFC: Bump
the minimum numpy version, drop older python versions
- - `#5761 <https://github.com/scipy/scipy/pull/5761>`__: DOC: Some
improvements to least squares docstrings
- - `#5762 <https://github.com/scipy/scipy/pull/5762>`__: MAINT:
spatial: distance refactoring
- - `#5768 <https://github.com/scipy/scipy/pull/5768>`__: DOC: Fix
io.loadmat docstring for mdict param
- - `#5770 <https://github.com/scipy/scipy/pull/5770>`__: BUG: Accept
anything np.dtype can handle for a dtype in sparse.random
- - `#5772 <https://github.com/scipy/scipy/pull/5772>`__: Update
sparse.csgraph.laplacian docstring
- - `#5777 <https://github.com/scipy/scipy/pull/5777>`__: BUG: fix
special.hyp0f1 to work correctly for complex inputs.
- - `#5780 <https://github.com/scipy/scipy/pull/5780>`__: DOC: Update
PIL error install URL
- - `#5781 <https://github.com/scipy/scipy/pull/5781>`__: DOC: Fix
documentation on solve_discrete_lyapunov
- - `#5782 <https://github.com/scipy/scipy/pull/5782>`__: DOC: cKDTree
and KDTree now reference each other
- - `#5783 <https://github.com/scipy/scipy/pull/5783>`__: DOC: Clarify
finish behaviour in scipy.optimize.brute
- - `#5784 <https://github.com/scipy/scipy/pull/5784>`__: MAINT:
Change default tolerances of least_squares to 1e-8
- - `#5787 <https://github.com/scipy/scipy/pull/5787>`__: BUG: Allow
Processing of Zero Order State Space Models in signal.ss2tf
- - `#5788 <https://github.com/scipy/scipy/pull/5788>`__: DOC, BUG:
Clarify and Enforce Input Types to 'Data' Objects
- - `#5789 <https://github.com/scipy/scipy/pull/5789>`__: ENH: sparse:
speedup LIL matrix slicing (was #3338)
- - `#5791 <https://github.com/scipy/scipy/pull/5791>`__: DOC: README:
remove coveralls.io
- - `#5792 <https://github.com/scipy/scipy/pull/5792>`__: MAINT:
remove uses of deprecated np.random.random_integers
- - `#5794 <https://github.com/scipy/scipy/pull/5794>`__: fix
affine_transform (fixes #1547 and #5702)
- - `#5795 <https://github.com/scipy/scipy/pull/5795>`__: DOC: Removed
uniform method from kmeans2 doc
- - `#5797 <https://github.com/scipy/scipy/pull/5797>`__: DOC: Clarify
the computation of weighted minkowski
- - `#5798 <https://github.com/scipy/scipy/pull/5798>`__: BUG: Ensure
scipy's _asfarray returns ndarray
- - `#5799 <https://github.com/scipy/scipy/pull/5799>`__: TST: Mpmath
testing patch
- - `#5801 <https://github.com/scipy/scipy/pull/5801>`__: allow
reading of certain IDL 8.0 .sav files
- - `#5803 <https://github.com/scipy/scipy/pull/5803>`__: DOC: fix
module name in error message
- - `#5804 <https://github.com/scipy/scipy/pull/5804>`__: DOC:
special: Expanded docs for special functions.
- - `#5805 <https://github.com/scipy/scipy/pull/5805>`__: DOC: Fix
order of returns in _spectral_helper
- - `#5806 <https://github.com/scipy/scipy/pull/5806>`__: ENH: sparse:
vectorized coo_matrix.diagonal
- - `#5808 <https://github.com/scipy/scipy/pull/5808>`__: ENH: Added
iqr function to compute IQR metric in scipy/stats/stats.py
- - `#5810 <https://github.com/scipy/scipy/pull/5810>`__: MAINT/BENCH:
sparse: Benchmark cleanup and additions
- - `#5811 <https://github.com/scipy/scipy/pull/5811>`__: DOC:
sparse.linalg: shape, not size
- - `#5813 <https://github.com/scipy/scipy/pull/5813>`__: Update
sparse ARPACK functions min `ncv` value
- - `#5815 <https://github.com/scipy/scipy/pull/5815>`__: BUG: Error
message contained wrong values
- - `#5816 <https://github.com/scipy/scipy/pull/5816>`__: remove dead
code from stats tests
- - `#5820 <https://github.com/scipy/scipy/pull/5820>`__: "in"->"a" in
order_filter docstring
- - `#5821 <https://github.com/scipy/scipy/pull/5821>`__: DOC: README:
INSTALL.txt was renamed in 2014
- - `#5825 <https://github.com/scipy/scipy/pull/5825>`__: DOC: typo in
the docstring of least_squares
- - `#5826 <https://github.com/scipy/scipy/pull/5826>`__: MAINT:
sparse: increase test coverage
- - `#5827 <https://github.com/scipy/scipy/pull/5827>`__: NdPPoly rebase
- - `#5828 <https://github.com/scipy/scipy/pull/5828>`__: Improve
numerical stability of hyp0f1 for large orders
- - `#5829 <https://github.com/scipy/scipy/pull/5829>`__: ENH: sparse:
Add copy parameter to all .toXXX() methods in sparse...
- - `#5830 <https://github.com/scipy/scipy/pull/5830>`__: DOC: rework
INSTALL.rst.txt
- - `#5831 <https://github.com/scipy/scipy/pull/5831>`__: Adds
plotting options to voronoi_plot_2d
- - `#5834 <https://github.com/scipy/scipy/pull/5834>`__: Update
stats.binom_test() docstring
- - `#5836 <https://github.com/scipy/scipy/pull/5836>`__: ENH, TST:
Allow SIMO tf's for tf2ss
- - `#5837 <https://github.com/scipy/scipy/pull/5837>`__: DOC: Image examples
- - `#5838 <https://github.com/scipy/scipy/pull/5838>`__: ENH: sparse:
add eliminate_zeros() to coo_matrix
- - `#5839 <https://github.com/scipy/scipy/pull/5839>`__: BUG: Fixed
name of NumpyVersion.__repr__
- - `#5845 <https://github.com/scipy/scipy/pull/5845>`__: MAINT: Fixed
typos in documentation
- - `#5847 <https://github.com/scipy/scipy/pull/5847>`__: Fix bugs in
sparsetools
- - `#5848 <https://github.com/scipy/scipy/pull/5848>`__: BUG:
sparse.linalg: add locks to ensure ARPACK threadsafety
- - `#5849 <https://github.com/scipy/scipy/pull/5849>`__: ENH:
sparse.linalg: upgrade to superlu 5.1.1
- - `#5851 <https://github.com/scipy/scipy/pull/5851>`__: ENH: expose
lapack's ilaver to python to allow lapack verion...
- - `#5852 <https://github.com/scipy/scipy/pull/5852>`__: MAINT:
runtests.py: ensure Ctrl-C interrupts the build
- - `#5854 <https://github.com/scipy/scipy/pull/5854>`__: DOC: Minor
update to documentation
- - `#5855 <https://github.com/scipy/scipy/pull/5855>`__: Pr 5640
- - `#5859 <https://github.com/scipy/scipy/pull/5859>`__: ENH: Add
random correlation matrix generator
- - `#5862 <https://github.com/scipy/scipy/pull/5862>`__: BUG: Allow
expm for complex matrix with shape (1, 1)
- - `#5863 <https://github.com/scipy/scipy/pull/5863>`__: FIX: Fix test
- - `#5864 <https://github.com/scipy/scipy/pull/5864>`__: DOC: add a
little note about the Normal survival function (Q-function)
- - `#5867 <https://github.com/scipy/scipy/pull/5867>`__: Fix for #5865
- - `#5869 <https://github.com/scipy/scipy/pull/5869>`__: extend
normal distribution cdf to complex domain
- - `#5872 <https://github.com/scipy/scipy/pull/5872>`__: DOC: Note
that morlet and cwt don't work together
- - `#5875 <https://github.com/scipy/scipy/pull/5875>`__: DOC:
interp2d class description
- - `#5876 <https://github.com/scipy/scipy/pull/5876>`__: MAINT:
spatial: remove a stray print statement
- - `#5878 <https://github.com/scipy/scipy/pull/5878>`__: MAINT: Fixed
noisy UserWarnings in ndimage tests. Fixes #5877
- - `#5879 <https://github.com/scipy/scipy/pull/5879>`__: MAINT:
sparse.linalg/superlu: add explicit casts to resolve compiler...
- - `#5880 <https://github.com/scipy/scipy/pull/5880>`__: MAINT:
signal: import gcd from math and not fractions when on...
- - `#5887 <https://github.com/scipy/scipy/pull/5887>`__: Neldermead
initial simplex
- - `#5894 <https://github.com/scipy/scipy/pull/5894>`__: BUG:
_CustomLinearOperator unpickalable in python3.5
- - `#5895 <https://github.com/scipy/scipy/pull/5895>`__: DOC:
special: slightly improve the multigammaln docstring
- - `#5900 <https://github.com/scipy/scipy/pull/5900>`__: Remove
duplicate assignment.
- - `#5901 <https://github.com/scipy/scipy/pull/5901>`__: Update bundled ARPACK
- - `#5904 <https://github.com/scipy/scipy/pull/5904>`__: ENH: Make
convolve and correlate order-agnostic
- - `#5905 <https://github.com/scipy/scipy/pull/5905>`__: ENH:
sparse.linalg: further LGMRES cleanups
- - `#5906 <https://github.com/scipy/scipy/pull/5906>`__: Enhancements
and cleanup in scipy.integrate (attempt #2)
- - `#5907 <https://github.com/scipy/scipy/pull/5907>`__: ENH: Change
sparse `.sum` and `.mean` dtype casting to match...
- - `#5909 <https://github.com/scipy/scipy/pull/5909>`__: changes for
convolution symmetry
- - `#5913 <https://github.com/scipy/scipy/pull/5913>`__: MAINT:
basinhopping remove instance test closes #5440
- - `#5919 <https://github.com/scipy/scipy/pull/5919>`__: MAINT:
uninitialised var if basinhopping niter=0. closes #5915
- - `#5920 <https://github.com/scipy/scipy/pull/5920>`__: BLD: Fix
missing lsame.c error for MKL
- - `#5921 <https://github.com/scipy/scipy/pull/5921>`__: DOC:
interpolate: add example showing how to work around issue...
- - `#5926 <https://github.com/scipy/scipy/pull/5926>`__: MAINT:
spatial: upgrade to Qhull 2015.2
- - `#5928 <https://github.com/scipy/scipy/pull/5928>`__: MAINT:
sparse: optimize DIA sum/diagonal, csgraph.laplacian
- - `#5929 <https://github.com/scipy/scipy/pull/5929>`__: Update
info/URL for octave-maintainers discussion
- - `#5930 <https://github.com/scipy/scipy/pull/5930>`__: TST:
special: silence DeprecationWarnings from sph_yn
- - `#5931 <https://github.com/scipy/scipy/pull/5931>`__: ENH:
implement the principle branch of the logarithm of Gamma.
- - `#5934 <https://github.com/scipy/scipy/pull/5934>`__: Typo: "mush" => "must"
- - `#5935 <https://github.com/scipy/scipy/pull/5935>`__: BUG:string
comparison stats._binned_statistic closes #5927
- - `#5938 <https://github.com/scipy/scipy/pull/5938>`__: Cythonize
stats.ks_2samp for a ~33% gain in speed.
- - `#5939 <https://github.com/scipy/scipy/pull/5939>`__: DOC: fix
optimize.fmin convergence docstring
- - `#5941 <https://github.com/scipy/scipy/pull/5941>`__: Fix minor
typo in squareform docstring
- - `#5942 <https://github.com/scipy/scipy/pull/5942>`__: Update
linregress stderr description.
- - `#5943 <https://github.com/scipy/scipy/pull/5943>`__: ENH: Improve
numerical accuracy of lognorm
- - `#5944 <https://github.com/scipy/scipy/pull/5944>`__: Merge
vonmises into stats pyx
- - `#5945 <https://github.com/scipy/scipy/pull/5945>`__: MAINT:
interpolate: Tweak declaration to avoid cython warning...
- - `#5946 <https://github.com/scipy/scipy/pull/5946>`__: MAINT:
sparse: clean up format conversion methods
- - `#5949 <https://github.com/scipy/scipy/pull/5949>`__: BUG: fix
sparse .mean to return a scalar instead of a matrix
- - `#5955 <https://github.com/scipy/scipy/pull/5955>`__: MAINT:
Replace calls to `hanning` with `hann`
- - `#5956 <https://github.com/scipy/scipy/pull/5956>`__: DOC: Missing
periods interfering with parsing
- - `#5958 <https://github.com/scipy/scipy/pull/5958>`__: MAINT: add a
test for lognorm.sf underflow
- - `#5961 <https://github.com/scipy/scipy/pull/5961>`__: MAINT
_centered(): rename size to shape
- - `#5962 <https://github.com/scipy/scipy/pull/5962>`__: ENH:
constants: Add multi-scale temperature conversion function
- - `#5965 <https://github.com/scipy/scipy/pull/5965>`__: ENH:
special: faster way for calculating comb() for exact=True
- - `#5975 <https://github.com/scipy/scipy/pull/5975>`__: ENH: Improve
FIR path of signal.decimate
- - `#5977 <https://github.com/scipy/scipy/pull/5977>`__: MAINT/BUG:
sparse: remove overzealous bmat checks
- - `#5978 <https://github.com/scipy/scipy/pull/5978>`__:
minimize_neldermead() stop at user requested maxiter or maxfev
- - `#5983 <https://github.com/scipy/scipy/pull/5983>`__: ENH: make
sparse `sum` cast dtypes like NumPy `sum` for 32-bit...
- - `#5985 <https://github.com/scipy/scipy/pull/5985>`__: BUG, API:
Add `jac` parameter to curve_fit
- - `#5989 <https://github.com/scipy/scipy/pull/5989>`__: ENH: Add
firls least-squares fitting
- - `#5990 <https://github.com/scipy/scipy/pull/5990>`__: BUG: read
tries to handle 20-bit WAV files but shouldn't
- - `#5991 <https://github.com/scipy/scipy/pull/5991>`__: DOC: Cleanup
wav read/write docs and add tables for common types
- - `#5994 <https://github.com/scipy/scipy/pull/5994>`__: ENH: Add
gesvd method for svd
- - `#5996 <https://github.com/scipy/scipy/pull/5996>`__: MAINT: Wave cleanup
- - `#5997 <https://github.com/scipy/scipy/pull/5997>`__: TST: Break
up upfirdn tests & compare to lfilter
- - `#6001 <https://github.com/scipy/scipy/pull/6001>`__: Filter design docs
- - `#6002 <https://github.com/scipy/scipy/pull/6002>`__: COMPAT:
Expand compatibility fromnumeric.py
- - `#6007 <https://github.com/scipy/scipy/pull/6007>`__: ENH: Skip
conversion of TF to TF in freqresp
- - `#6009 <https://github.com/scipy/scipy/pull/6009>`__: DOC: fix
incorrect versionadded for entr, rel_entr, kl_div
- - `#6013 <https://github.com/scipy/scipy/pull/6013>`__: Fixed the
entropy calculation of the von Mises distribution.
- - `#6014 <https://github.com/scipy/scipy/pull/6014>`__: MAINT: make
gamma, rgamma use loggamma for complex arguments
- - `#6020 <https://github.com/scipy/scipy/pull/6020>`__: WIP: ENH:
add exact=True factorial for vectors
- - `#6022 <https://github.com/scipy/scipy/pull/6022>`__: Added
'lanczos' to the image interpolation function list.
- - `#6024 <https://github.com/scipy/scipy/pull/6024>`__: BUG:
optimize: do not use dummy constraints in SLSQP when no...
- - `#6025 <https://github.com/scipy/scipy/pull/6025>`__: ENH:
Boundary value problem solver for ODE systems
- - `#6029 <https://github.com/scipy/scipy/pull/6029>`__: MAINT:
Future imports for optimize._lsq
- - `#6030 <https://github.com/scipy/scipy/pull/6030>`__: ENH:
stats.trap - adding trapezoidal distribution closes #6028
- - `#6031 <https://github.com/scipy/scipy/pull/6031>`__: MAINT: Some
improvements to optimize._numdiff
- - `#6032 <https://github.com/scipy/scipy/pull/6032>`__: MAINT: Add
special/_comb.c to .gitignore
- - `#6033 <https://github.com/scipy/scipy/pull/6033>`__: BUG: check
the requested approximation rank in interpolative.svd
- - `#6034 <https://github.com/scipy/scipy/pull/6034>`__: DOC: Doc for
mannwhitneyu in stats.py corrected
- - `#6040 <https://github.com/scipy/scipy/pull/6040>`__: FIX: Edit
the wrong link in f_oneway
- - `#6044 <https://github.com/scipy/scipy/pull/6044>`__: BUG: (ordqz)
always increase parameter lwork by 1.
- - `#6047 <https://github.com/scipy/scipy/pull/6047>`__: ENH: extend
special.spence to complex arguments.
- - `#6049 <https://github.com/scipy/scipy/pull/6049>`__: DOC: Add
documentation of PR #5640 to the 0.18.0 release notes
- - `#6050 <https://github.com/scipy/scipy/pull/6050>`__: MAINT: small
cleanups related to loggamma
- - `#6070 <https://github.com/scipy/scipy/pull/6070>`__: Add asarray
to explicitly cast list to numpy array in wilcoxon...
- - `#6071 <https://github.com/scipy/scipy/pull/6071>`__: DOC:
antialiasing filter and link decimate resample, etc.
- - `#6075 <https://github.com/scipy/scipy/pull/6075>`__: MAINT:
reimplement special.digamma for complex arguments
- - `#6080 <https://github.com/scipy/scipy/pull/6080>`__: avoid
multiple computation in kstest
- - `#6081 <https://github.com/scipy/scipy/pull/6081>`__: Clarified
pearson correlation return value
- - `#6085 <https://github.com/scipy/scipy/pull/6085>`__: ENH: allow
long indices of sparse matrix with umfpack in spsolve()
- - `#6086 <https://github.com/scipy/scipy/pull/6086>`__: fix
description for associated Laguerre polynomials
- - `#6087 <https://github.com/scipy/scipy/pull/6087>`__: Corrected
docstring of splrep.
- - `#6094 <https://github.com/scipy/scipy/pull/6094>`__: ENH:
special: change zeta signature to zeta(x, q=1)
- - `#6095 <https://github.com/scipy/scipy/pull/6095>`__: BUG: fix
integer overflow in special.spence
- - `#6106 <https://github.com/scipy/scipy/pull/6106>`__: Fixed Issue #6105
- - `#6116 <https://github.com/scipy/scipy/pull/6116>`__: BUG: matrix
logarithm edge case
- - `#6119 <https://github.com/scipy/scipy/pull/6119>`__: TST:
DeprecationWarnings in stats on python 3.5 closes #5885
- - `#6120 <https://github.com/scipy/scipy/pull/6120>`__: MAINT:
sparse: clean up sputils.isintlike
- - `#6122 <https://github.com/scipy/scipy/pull/6122>`__: DOC:
optimize: linprog docs should say minimize instead of maximize
- - `#6123 <https://github.com/scipy/scipy/pull/6123>`__: DOC:
optimize: document the `fun` field in `scipy.optimize.OptimizeResult`
- - `#6124 <https://github.com/scipy/scipy/pull/6124>`__: Move FFT
zero-padding calculation from signaltools to fftpack
- - `#6125 <https://github.com/scipy/scipy/pull/6125>`__: MAINT:
improve special.gammainc in the ``a ~ x`` regime.
- - `#6130 <https://github.com/scipy/scipy/pull/6130>`__: BUG: sparse:
Fix COO dot with zero columns
- - `#6138 <https://github.com/scipy/scipy/pull/6138>`__: ENH: stats:
Improve behavior of genextreme.sf and genextreme.isf
- - `#6146 <https://github.com/scipy/scipy/pull/6146>`__: MAINT:
simplify the expit implementation
- - `#6151 <https://github.com/scipy/scipy/pull/6151>`__: MAINT:
special: make generate_ufuncs.py output deterministic
- - `#6152 <https://github.com/scipy/scipy/pull/6152>`__: TST:
special: better test for gammainc at large arguments
- - `#6153 <https://github.com/scipy/scipy/pull/6153>`__: ENH: Make
next_fast_len public and faster
- - `#6154 <https://github.com/scipy/scipy/pull/6154>`__: fix typo
"mush"-->"must"
- - `#6155 <https://github.com/scipy/scipy/pull/6155>`__: DOC: Fix
some incorrect RST definition lists
- - `#6160 <https://github.com/scipy/scipy/pull/6160>`__: make
logsumexp error out on a masked array
- - `#6161 <https://github.com/scipy/scipy/pull/6161>`__: added
missing bracket to rosen documentation
- - `#6163 <https://github.com/scipy/scipy/pull/6163>`__: ENH: Added
"kappa4" and "kappa3" distributions.
- - `#6164 <https://github.com/scipy/scipy/pull/6164>`__: DOC: Minor
clean-up in integrate._bvp
- - `#6169 <https://github.com/scipy/scipy/pull/6169>`__: Fix
mpf_assert_allclose to handle iterable results, such as maps
- - `#6170 <https://github.com/scipy/scipy/pull/6170>`__: Fix
pchip_interpolate convenience function
- - `#6172 <https://github.com/scipy/scipy/pull/6172>`__: Corrected
misplaced bracket in doc string
- - `#6175 <https://github.com/scipy/scipy/pull/6175>`__: ENH:
sparse.csgraph: Pass indices to shortest_path
- - `#6178 <https://github.com/scipy/scipy/pull/6178>`__: TST:
increase test coverage of sf and isf of a generalized extreme...
- - `#6179 <https://github.com/scipy/scipy/pull/6179>`__: TST: avoid a
deprecation warning from numpy
- - `#6181 <https://github.com/scipy/scipy/pull/6181>`__: ENH:
Boundary conditions for CubicSpline
- - `#6182 <https://github.com/scipy/scipy/pull/6182>`__: DOC: Add
examples/graphs to max_len_seq
- - `#6183 <https://github.com/scipy/scipy/pull/6183>`__: BLD: update
Bento build config files for recent changes.
- - `#6184 <https://github.com/scipy/scipy/pull/6184>`__: BUG: fix
issue in io/wavfile for float96 input.
- - `#6186 <https://github.com/scipy/scipy/pull/6186>`__: ENH:
Periodic extrapolation for PPoly and BPoly
- - `#6192 <https://github.com/scipy/scipy/pull/6192>`__: MRG: Add circle-CI
- - `#6193 <https://github.com/scipy/scipy/pull/6193>`__: ENH: sparse:
avoid setitem densification
- - `#6196 <https://github.com/scipy/scipy/pull/6196>`__: Fixed
missing sqrt in docstring of Mahalanobis distance in cdist,...
- - `#6206 <https://github.com/scipy/scipy/pull/6206>`__: MAINT: Minor
changes in solve_bvp
- - `#6207 <https://github.com/scipy/scipy/pull/6207>`__: BUG: linalg:
for BLAS, downcast complex256 to complex128, not...
- - `#6209 <https://github.com/scipy/scipy/pull/6209>`__: BUG:
io.matlab: avoid buffer overflows in read_element_into
- - `#6210 <https://github.com/scipy/scipy/pull/6210>`__: BLD: use
setuptools when building.
- - `#6214 <https://github.com/scipy/scipy/pull/6214>`__: BUG:
sparse.linalg: fix bug in LGMRES breakdown handling
- - `#6215 <https://github.com/scipy/scipy/pull/6215>`__: MAINT:
special: make loggamma use zdiv
- - `#6220 <https://github.com/scipy/scipy/pull/6220>`__: DOC: Add parameter
- - `#6221 <https://github.com/scipy/scipy/pull/6221>`__: ENH: Improve
Newton solver for solve_bvp
- - `#6223 <https://github.com/scipy/scipy/pull/6223>`__: pchip should
work for length-2 arrays
- - `#6224 <https://github.com/scipy/scipy/pull/6224>`__: signal.lti:
deprecate cross-class properties/setters
- - `#6229 <https://github.com/scipy/scipy/pull/6229>`__: BUG:
optimize: avoid an infinite loop in Newton-CG
- - `#6230 <https://github.com/scipy/scipy/pull/6230>`__: Add example
for application of gaussian filter
- - `#6236 <https://github.com/scipy/scipy/pull/6236>`__: MAINT:
gumbel_l accuracy
- - `#6237 <https://github.com/scipy/scipy/pull/6237>`__: MAINT:
rayleigh accuracy
- - `#6238 <https://github.com/scipy/scipy/pull/6238>`__: MAINT:
logistic accuracy
- - `#6239 <https://github.com/scipy/scipy/pull/6239>`__: MAINT:
bradford distribution accuracy
- - `#6240 <https://github.com/scipy/scipy/pull/6240>`__: MAINT: avoid
bad fmin in l-bfgs-b due to maxfun interruption
- - `#6241 <https://github.com/scipy/scipy/pull/6241>`__: MAINT:
weibull_min accuracy
- - `#6246 <https://github.com/scipy/scipy/pull/6246>`__: ENH: Add
_support_mask to distributions
- - `#6247 <https://github.com/scipy/scipy/pull/6247>`__: fixed a
print error for an example of ode
- - `#6249 <https://github.com/scipy/scipy/pull/6249>`__: MAINT:
change x-axis label for stats.probplot to "theoretical...
- - `#6250 <https://github.com/scipy/scipy/pull/6250>`__: DOC: fix typos
- - `#6251 <https://github.com/scipy/scipy/pull/6251>`__: MAINT:
constants: filter out test noise from deprecated conversions
- - `#6252 <https://github.com/scipy/scipy/pull/6252>`__: MAINT:
io/arff: remove unused variable
- - `#6253 <https://github.com/scipy/scipy/pull/6253>`__: Add examples
to scipy.ndimage.filters
- - `#6254 <https://github.com/scipy/scipy/pull/6254>`__: MAINT:
special: fix some build warnings
- - `#6258 <https://github.com/scipy/scipy/pull/6258>`__: MAINT:
inverse gamma distribution accuracy
- - `#6260 <https://github.com/scipy/scipy/pull/6260>`__: MAINT:
signal.decimate - Use discrete-time objects
- - `#6262 <https://github.com/scipy/scipy/pull/6262>`__: BUG: odr:
fix string formatting
- - `#6267 <https://github.com/scipy/scipy/pull/6267>`__: TST: fix
some test issues in interpolate and stats.
- - `#6269 <https://github.com/scipy/scipy/pull/6269>`__: TST: fix
some warnings in the test suite
- - `#6274 <https://github.com/scipy/scipy/pull/6274>`__: ENH: Add sosfiltfilt
- - `#6276 <https://github.com/scipy/scipy/pull/6276>`__: DOC: update
release notes for 0.18.0
- - `#6277 <https://github.com/scipy/scipy/pull/6277>`__: MAINT:
update the author name mapping
- - `#6282 <https://github.com/scipy/scipy/pull/6282>`__: DOC:
Correcting references for scipy.stats.normaltest
- - `#6283 <https://github.com/scipy/scipy/pull/6283>`__: DOC: some
more additions to 0.18.0 release notes.
- - `#6284 <https://github.com/scipy/scipy/pull/6284>`__: Add `..
versionadded::` directive to `loggamma`.
- - `#6285 <https://github.com/scipy/scipy/pull/6285>`__: BUG: stats:
Inconsistency in the multivariate_normal docstring...
- - `#6290 <https://github.com/scipy/scipy/pull/6290>`__: Add author
list, gh-lists to 0.18.0 release notes
- - `#6293 <https://github.com/scipy/scipy/pull/6293>`__: TST:
special: relax a test's precision
- - `#6295 <https://github.com/scipy/scipy/pull/6295>`__: BUG: sparse:
stop comparing None and int in bsr_matrix constructor
- - `#6313 <https://github.com/scipy/scipy/pull/6313>`__: MAINT: Fix
for python 3.5 travis-ci build problem.
- - `#6327 <https://github.com/scipy/scipy/pull/6327>`__: TST: signal:
use assert_allclose for testing near-equality in...
- - `#6330 <https://github.com/scipy/scipy/pull/6330>`__: BUG:
spatial/qhull: allocate qhT via malloc to ensure CRT likes...
- - `#6332 <https://github.com/scipy/scipy/pull/6332>`__: TST: fix
stats.iqr test to not emit warnings, and fix line lengths.
- - `#6334 <https://github.com/scipy/scipy/pull/6334>`__: MAINT:
special: fix a test for hyp0f1
- - `#6347 <https://github.com/scipy/scipy/pull/6347>`__: TST:
spatial.qhull: skip a test on 32-bit platforms
- - `#6350 <https://github.com/scipy/scipy/pull/6350>`__: BUG:
optimize/slsqp: don't overwrite an array out of bounds
- - `#6351 <https://github.com/scipy/scipy/pull/6351>`__: BUG: #6318
Interp1d 'nearest' integer x-axis overflow issue fixed
- - `#6355 <https://github.com/scipy/scipy/pull/6355>`__: Backports for 0.18.0


Checksums
=========

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