[SciPy-User] scipy-0.16.0 self-test result

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[SciPy-User] scipy-0.16.0 self-test result

Neal Becker
fedora 22 x86_64

built with:
CFLAGS="-O3 -march=native" ATLAS=/usr/lib64/openblas FFTW=/usr/lib64
BLAS=/usr/lib64 LAPACK=/usr/lib64 python3 setup.py install --user

[nbecker@nbecker2 ~]$ python -c 'import scipy; scipy.test("full");'
Running unit tests for scipy
NumPy version 1.9.2
NumPy is installed in /home/nbecker/.local/lib/python2.7/site-packages/numpy
SciPy version 0.16.0
SciPy is installed in /home/nbecker/.local/lib/python2.7/site-packages/scipy
Python version 2.7.10 (default, Jul  5 2015, 14:15:43) [GCC 5.1.1 20150618
(Red Hat 5.1.1-4)]
nose version 1.3.7


======================================================================
FAIL: test_qhull.TestUtilities.test_degenerate_barycentric_transforms
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/scipy/spatial/tests/test_qhull.py", line 294, in
test_degenerate_barycentric_transforms
    assert_(bad_count < 20, bad_count)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/numpy/testing/utils.py", line 53, in assert_
    raise AssertionError(smsg)
AssertionError: 20

======================================================================
FAIL: test_qhull.TestUtilities.test_more_barycentric_transforms
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/scipy/spatial/tests/test_qhull.py", line 353, in
test_more_barycentric_transforms
    unit_cube_tol=1e7*eps)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/scipy/spatial/tests/test_qhull.py", line 280, in
_check_barycentric_transforms
    assert_(ok.all(), "%s %s" % (err_msg, np.where(~ok)))
  File "/home/nbecker/.local/lib/python2.7/site-
packages/numpy/testing/utils.py", line 53, in assert_
    raise AssertionError(smsg)
AssertionError: ndim=4 (array([ 8071, 10512, 10513]),)

----------------------------------------------------------------------
Ran 19618 tests in 588.242s

FAILED (KNOWNFAIL=149, SKIP=1195, failures=2)


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Re: scipy-0.16.0 self-test result

ralfgommers


On Tue, Jul 28, 2015 at 4:40 PM, Neal Becker <[hidden email]> wrote:
fedora 22 x86_64

built with:
CFLAGS="-O3 -march=native" ATLAS=/usr/lib64/openblas FFTW=/usr/lib64
BLAS=/usr/lib64 LAPACK=/usr/lib64 python3 setup.py install --user

[nbecker@nbecker2 ~]$ python -c 'import scipy; scipy.test("full");'
Running unit tests for scipy
NumPy version 1.9.2
NumPy is installed in /home/nbecker/.local/lib/python2.7/site-packages/numpy
SciPy version 0.16.0
SciPy is installed in /home/nbecker/.local/lib/python2.7/site-packages/scipy
Python version 2.7.10 (default, Jul  5 2015, 14:15:43) [GCC 5.1.1 20150618
(Red Hat 5.1.1-4)]
nose version 1.3.7


======================================================================
FAIL: test_qhull.TestUtilities.test_degenerate_barycentric_transforms
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/scipy/spatial/tests/test_qhull.py", line 294, in
test_degenerate_barycentric_transforms
    assert_(bad_count < 20, bad_count)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/numpy/testing/utils.py", line 53, in assert_
    raise AssertionError(smsg)
AssertionError: 20

======================================================================
FAIL: test_qhull.TestUtilities.test_more_barycentric_transforms
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/scipy/spatial/tests/test_qhull.py", line 353, in
test_more_barycentric_transforms
    unit_cube_tol=1e7*eps)
  File "/home/nbecker/.local/lib/python2.7/site-
packages/scipy/spatial/tests/test_qhull.py", line 280, in
_check_barycentric_transforms
    assert_(ok.all(), "%s %s" % (err_msg, np.where(~ok)))
  File "/home/nbecker/.local/lib/python2.7/site-
packages/numpy/testing/utils.py", line 53, in assert_
    raise AssertionError(smsg)
AssertionError: ndim=4 (array([ 8071, 10512, 10513]),)

----------------------------------------------------------------------
Ran 19618 tests in 588.242s

FAILED (KNOWNFAIL=149, SKIP=1195, failures=2)

Hi Neal, this is a known issue probably related to the LAPACK flavor you're using (I'm seeing it on 32-bit Ubuntu with ATLAS as well): https://github.com/scipy/scipy/issues/2997

Ralf


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